Modar Tutorial
Example 4: Villin headpiece simulation
     step4 on screen log message:

 
Process ID: 1371
Input file: step4_merge_all.inp
<< *file backup function is disabled
<< Modar log message will be saved to file "step4_merge_all.log"
|
|  Summary of MD system:
|    number of segments:    3
|    number of residues:    6996
|    number of atoms:       21424
|    number of bonds:       21404
|    number of angles:      8025
|    number of dihedrals:   1588
|    number of impropers:   92
|    number of cross terms: 34
|    net charge:  3.10862446895e-15
|    total mass:  130076.2386
|    PBC box: Cubic, 60 x 60 x 60
|
|  output files:
|    step4_all.msf
|    step4_all.pdb
|
|  it's time to check the whole MD system by Movar or VMD
|  it's ready to go next step to do minimization:
|    ./modar -nobak step5_do_minimization.inp
|
<< Job done.
<< Thank you and enjoy the simulation! 

 

 

 

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